PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010908.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 465aa    MW: 51826.5 Da    PI: 8.5406
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010908.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
      CCG010908.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP

2Myb_DNA-binding45.32e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
      CCG010908.1  67 RGTFSQQEEKLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                      899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-28564IPR009057Homeodomain-like
PROSITE profilePS5129425.116965IPR017930Myb domain
SuperFamilySSF466894.12E-2912108IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
CDDcd001675.75E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.95866116IPR017930Myb domain
SMARTSM007176.4E-1366114IPR001005SANT/Myb domain
PfamPF002492.1E-1367111IPR001005SANT/Myb domain
CDDcd001674.60E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGRHPCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEKLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQGG  120
IDPVTHKPLS EVENGEDKNP PASGTKDKAS AVSNTELNLL KADNSKSSGA NLQEKRSSPI  180
SPNGYQLERR STSSSKVLNG NGNNTNDHVN NNLMTPASNK DFFLDRFTAS HHQGSTSNCQ  240
PSDFVGHFPL QQLNYASNAR LATNSIPSLW LSQSSKAFDM NSEFSSTVIP SILPPAVTSS  300
FHSTSMSYKP SITVSPDNPS LSSFTTNSCR LWETGNSRSN SNSNTVSNGS AELQSNSSFF  360
ENTIFSWGLG ECGSAEKEAQ NHLMGSQHED IKWPEYLQNP LFMAAALQNQ NQQSLYNEIK  420
SETQVVTENS SGMWPHNQQQ QQQPLQNPDI CPRDIQRITA SYGYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707840.0AB970784.1 Populus nigra PniMYB055 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040042.10.0PREDICTED: transcription factor MYB86-like
TrEMBLB9I9970.0B9I997_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108333103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-99myb domain protein 61